Pubmed: "protein Structure P...
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A different look at the quality of modeled three-dimensional protein structures.
via PubMed: "protein structure p... by (author unknown) on May 08, 2008
Related ArticlesA different look at the quality of modeled three-dimensional protein structures.J Bioinform Comput Biol. 2008 Apr;6(2):335-45Authors: Poleksic A, Fienup M, Danzer JF, Debe DAMeasuring the accuracy of protein three-dimensional structures is one of the most important problems in protein structure prediction. For structure-based drug design, the accuracy of the binding site is far...
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A Test on Peptide Stability of AMBER Force Fields with Implicit Solvation.
via PubMed: "protein structure p... by (author unknown) on May 12, 2008
Shared by mndoci Problem is that we still have a long way to goRelated ArticlesA Test on Peptide Stability of AMBER Force Fields with Implicit Solvation.J Phys Chem B. 2008 May 10;Authors: Shell MS, Ritterson R, Dill KAWe used replica exchange molecular dynamics (REMD) simulations to evaluate four different AMBER force fields and three different implicit solvent models. Our aim was to determine...
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Guiding conformation space search with an all-atom energy potential.
via PubMed: "protein structure p... by (author unknown) on June 07, 2008
Shared by mndoci hmmm .. .need to look into this.Related ArticlesGuiding conformation space search with an all-atom energy potential.Proteins. 2008 Jun 5;Authors: Brunette T, Brock OThe most significant impediment for protein structure prediction is the inadequacy of conformation space search. Conformation space is too large and the energy landscape too rugged for existing search methods to...
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A stringent test for hydrophobicity scales: Two proteins with 88% sequence identity but different structure and function.
via PubMed: "protein structure p... by Kister AE, Phillips JC on July 02, 2008
Related ArticlesA stringent test for hydrophobicity scales: Two proteins with 88% sequence identity but different structure and function.Proc Natl Acad Sci U S A. 2008 Jun 30;Authors: Kister AE, Phillips JCProtein-protein interactions (protein functionalities) are mediated by water, which compacts individual proteins and promotes close and temporarily stable large-area protein-protein...
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